Is a startup sequence required for each power supply system in Arria V SoC and Cyclone V SoC devices?

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Do Arria V SoC and Cyclone V SoC devices require a startup sequence for each power supply system?

SoC FPGAs

Yes.
For details, please refer to the handbook of each device.

Arria V SoCs:
https://www.altera.com/en_US/pdfs/literature/hb/arria-v/av_5v2.pdf
Chapter 11. Power Management in Arria V Devices

Cyclone V SoCs:
https://www.altera.com/en_US/pdfs/literature/hb/cyclone-v/cv_5v2.pdf
Chapter 10. Power Management in Cyclone V Devices

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